Publications

Changing the Apoptosis Pathway through Evolutionary Protein Design.

J Mol Biol

Shultis D, Mitra P, Huang X, Johnson J, Khattak NA, Gray F, Piper C, Czajka J, Hansen L, Wan B, Chinnaswamy K, Liu L, Wang M, Pan J, Stuckey J, Cierpicki T, Borchers CH, Wang S, Lei M, Zhang Y

2019

Multiplexed LC/ESI-MRM-MS-based Assay for Identification of Coronary Artery Disease Biomarkers in Human Plasma

Proteomics Clin Appl.

Anwar MA, Dai DL, Wilson-McManus J, Smith D, Francis GA, Borchers CH, McManus BM, Hill JS, Cohen Freue GV

2019

Chaperone activation and client binding of a 2-cysteine peroxiredoxin

Nat Commun

Teixeira F, Tse E, Castro H, Makepeace KAT, Meinen BA, Borchers CH, Poole LB, Bardwell JC, Tomás AM, Southworth DR, Jakob U

2019

The molecular mechanisms driving physiological changes after long duration space flights revealed by quantitative analysis of human blood proteins

BMC Med Genomics

Kashirina DN, Percy AJ, Pastushkova LK, Borchers CH, Kireev KS, Ivanisenko VA, Kononikhin AS, Nikolaev EN, Larina IM.

2019

Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations

PLOS Comput Biol

Brodie NI, Popov KI, Petrotchenko EV, Dokholyan NV, Borchers CH

2019

The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study.

Anal Chem

Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews PC, Bernfur K, Borchers CH, Brodie NI, Bruce JE, Cao Y, Chaignepain S, Chavez JD, Claverol S, Cox J, Davis TN, Degliesposti G, Dong MQ, Edinger N, Emanuelsson C, Gay M, Götze M, Gomes-Neto F, Gozzo FC, Gutierrez CB, Haupt C, Heck AJR, Herzog F, Huang L, Hoopmann MR, Kalisman N, Klykov O, Kukačka Z, Liu F, MacCoss MJ, Mechtler K, Mesika R, Moritz RL, Nagaraj N, Nesati V, Neves-Fereira AGC, Ninnis R, Novák P, O'Reilly FJ, Pelzing M, Petrotchenko EV, Piersimoni L, Plasencia M, Pukala TL, Rand KD, Rappsilber J, Reichman D, Sailer C, Sarnowski CP, Scheltema RA, Schmidt C, Schriemer DC, Shi Y, Skehel JM, Slavin M, Sobott F, Solis-Mezarino V, Stephanowitz H, Stengel F, Stieger CE, Trabjerg E, Trnka MJ, Vilaseca M, Viner R, Xiang Y, Yılmaz Ş, Zelter A, Ziemianowicz DS, Leitner A, Sinz A

2019

Evaluating measures of association for single-cell transcriptomics

Nature Methods

Skinnider, M.A., J.W. Squair and L.J. Foster.

2019

Characterization of the Citrobacter rodentium Cpx regulon and its role in host infection

Molecular Microbiology

Vogt, S.L., R. Scholz, Y. Peng, R.L. Guest, N.E. Scott, S.E. Woodward, L.J. Foster, T.L. Raivio, and B.B. Finlay

2019

Prediction of LC-MS/MS properties of peptides from sequence by deep learning

Mol Cell Proteomics

Guan S, Moran M, Ma B

2019

Evosep One enables robust deep proteome coverage using tandem mass tags while significantly reducing instrument time

Journal of Proteome Research

Krieger JR, Wybenga-Groot LE, Tong J, Bache N, Tsao MS, Moran MF

2019