Publications

Changing the Apoptosis Pathway through Evolutionary Protein Design.

J Mol Biol

2019

Shultis D, Mitra P, Huang X, Johnson J, Khattak NA, Gray F, Piper C, Czajka J, Hansen L, Wan B, Chinnaswamy K, Liu L, Wang M, Pan J, Stuckey J, Cierpicki T, Borchers CH, Wang S, Lei M, Zhang Y

The First Community-Wide, Comparative Cross-linking Mass Spectrometry Study.

Anal Chem

2019

Iacobucci C, Piotrowski C, Aebersold R, Amaral BC, Andrews PC, Bernfur K, Borchers CH, Brodie NI, Bruce JE, Cao Y, Chaignepain S, Chavez JD, Claverol S, Cox J, Davis TN, Degliesposti G, Dong MQ, Edinger N, Emanuelsson C, Gay M, Götze M, Gomes-Neto F, Gozzo FC, Gutierrez CB, Haupt C, Heck AJR, Herzog F, Huang L, Hoopmann MR, Kalisman N, Klykov O, Kukačka Z, Liu F, MacCoss MJ, Mechtler K, Mesika R, Moritz RL, Nagaraj N, Nesati V, Neves-Fereira AGC, Ninnis R, Novák P, O'Reilly FJ, Pelzing M, Petrotchenko EV, Piersimoni L, Plasencia M, Pukala TL, Rand KD, Rappsilber J, Reichman D, Sailer C, Sarnowski CP, Scheltema RA, Schmidt C, Schriemer DC, Shi Y, Skehel JM, Slavin M, Sobott F, Solis-Mezarino V, Stephanowitz H, Stengel F, Stieger CE, Trabjerg E, Trnka MJ, Vilaseca M, Viner R, Xiang Y, Yılmaz Ş, Zelter A, Ziemianowicz DS, Leitner A, Sinz A

Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations

PLOS Comput Biol

2019

Brodie NI, Popov KI, Petrotchenko EV, Dokholyan NV, Borchers CH

The molecular mechanisms driving physiological changes after long duration space flights revealed by quantitative analysis of human blood proteins

BMC Med Genomics

2019

Kashirina DN, Percy AJ, Pastushkova LK, Borchers CH, Kireev KS, Ivanisenko VA, Kononikhin AS, Nikolaev EN, Larina IM.

Multiplexed LC/ESI-MRM-MS-based Assay for Identification of Coronary Artery Disease Biomarkers in Human Plasma

Proteomics Clin Appl.

2019

Anwar MA, Dai DL, Wilson-McManus J, Smith D, Francis GA, Borchers CH, McManus BM, Hill JS, Cohen Freue GV

Evaluating measures of association for single-cell transcriptomics

Nature Methods

2019

Skinnider, M.A., J.W. Squair and L.J. Foster.

Chaperone activation and client binding of a 2-cysteine peroxiredoxin

Nat Commun

2019

Teixeira F, Tse E, Castro H, Makepeace KAT, Meinen BA, Borchers CH, Poole LB, Bardwell JC, Tomás AM, Southworth DR, Jakob U

Characterization of the Citrobacter rodentium Cpx regulon and its role in host infection

Molecular Microbiology

2019

Vogt, S.L., R. Scholz, Y. Peng, R.L. Guest, N.E. Scott, S.E. Woodward, L.J. Foster, T.L. Raivio, and B.B. Finlay

Prediction of LC-MS/MS properties of peptides from sequence by deep learning

Mol Cell Proteomics

2019

Guan S, Moran M, Ma B

Evosep One enables robust deep proteome coverage using tandem mass tags while significantly reducing instrument time

Journal of Proteome Research

2019

Krieger JR, Wybenga-Groot LE, Tong J, Bache N, Tsao MS, Moran MF